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Structure of the Pho85-Pho80 CDK-cyclin Complex of the Phosphate-responsive Signal Transduction Pathway
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 283 9ul 12% PEG 10000, 10% glycerol, 0.2ul 0.25 M strontium chloride (SrCl2), 10 mM Tris (2-carboxyethyl) phosphine (TCEP, 0.1 M 2-morpholinoethanesulfonic acid (MES), pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 283K
Crystal Properties Matthews coefficient Solvent content 4.79 74.33
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 147.775 α = 90 b = 147.775 β = 90 c = 211.825 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 200 CCD CUSTOM-MADE APS 19ID 2005-07-21 M SINGLE WAVELENGTH 2 1 x-ray 200 CCD ADSC QUANTUM 315 ESRF ID29 2005-04-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97948 APS 19-ID 2 SYNCHROTRON ESRF BEAMLINE ID29 0.97926 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 2.906 15.03 88.4 0.096 0.096 12.2 3.2 52156 47431 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.906 3 71.2 0.29 0.29 2.4 2.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.906 15.03 52156 49532 2622 88.49 0.28316 0.28146 0.2779 0.31536 0.3125 RANDOM 73.804
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 5.14 2.57 5.14 -7.71
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.747 r_dihedral_angle_3_deg 18.716 r_dihedral_angle_4_deg 18.569 r_dihedral_angle_1_deg 6.515 r_angle_refined_deg 1.469 r_mcangle_it 1.334 r_scangle_it 1.237 r_mcbond_it 1.09 r_scbond_it 0.723 r_nbtor_refined 0.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.747 r_dihedral_angle_3_deg 18.716 r_dihedral_angle_4_deg 18.569 r_dihedral_angle_1_deg 6.515 r_angle_refined_deg 1.469 r_mcangle_it 1.334 r_scangle_it 1.237 r_mcbond_it 1.09 r_scbond_it 0.723 r_nbtor_refined 0.31 r_nbd_refined 0.213 r_symmetry_vdw_refined 0.212 r_xyhbond_nbd_refined 0.138 r_chiral_restr 0.115 r_symmetry_hbond_refined 0.098 r_bond_refined_d 0.015 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7994 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 24
Software Software Software Name Purpose REFMAC refinement SOLVE phasing CNS refinement HKL-2000 data reduction HKL-2000 data scaling HKL-2000 data collection