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The crystal structure of OspA mutant
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2G8C PDB entry 2G8C
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 293 28% PEG400, 0.1M Tris-HCl, pH 7, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.47 50.29
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 36.133 α = 90 b = 55.617 β = 98.97 c = 66.124 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2006-10-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-D 0.9793 APS 23-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 50 99.9 0.077 13.82 3.7 51057
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.4 1.45 99.6 0.454 3.59 3.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 2G8C 1.4 20 48229 48229 2593 99.66 0.17072 0.16881 0.1779 0.20681 0.2143 RANDOM 14.426
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.44 -0.19 0.13 -0.63
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.021 r_dihedral_angle_3_deg 10.2 r_dihedral_angle_4_deg 8.817 r_dihedral_angle_1_deg 5.839 r_sphericity_free 4.547 r_scangle_it 3.508 r_sphericity_bonded 2.988 r_scbond_it 2.61 r_mcangle_it 1.667 r_mcbond_it 1.367
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.021 r_dihedral_angle_3_deg 10.2 r_dihedral_angle_4_deg 8.817 r_dihedral_angle_1_deg 5.839 r_sphericity_free 4.547 r_scangle_it 3.508 r_sphericity_bonded 2.988 r_scbond_it 2.61 r_mcangle_it 1.667 r_mcbond_it 1.367 r_rigid_bond_restr 1.334 r_angle_refined_deg 1.313 r_angle_other_deg 0.794 r_mcbond_other 0.479 r_symmetry_vdw_refined 0.208 r_nbd_refined 0.2 r_nbd_other 0.189 r_nbtor_refined 0.161 r_symmetry_hbond_refined 0.155 r_symmetry_vdw_other 0.152 r_xyhbond_nbd_refined 0.128 r_nbtor_other 0.081 r_chiral_restr 0.079 r_bond_refined_d 0.009 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1848 Nucleic Acid Atoms Solvent Atoms 430 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data collection HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing