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Crystal structure of a Queuosine biosynthesis protein queC (ECA1155) from Erwinia carotovora subsp. atroseptica SCRI1043 at 2.40 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.1 277 NANODROP, 0.2M Li3Citrate, 20.0% PEG 3350, No Buffer pH 8.1, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.32 46.98
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 78.154 α = 90 b = 78.154 β = 90 c = 77.755 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2007-03-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.97917 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 27.566 99.9 0.086 0.086 6.4 13.5 9920
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.46 100 0.649 0.649 1.2 12 710
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.4 27.566 9883 475 99.88 0.188 0.188 0.186 0.1922 0.223 0.2164 RANDOM 48.553
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.35 -1.35 2.69
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.132 r_dihedral_angle_4_deg 18.732 r_dihedral_angle_3_deg 14.549 r_scangle_it 7.573 r_dihedral_angle_1_deg 7.207 r_scbond_it 5.647 r_mcangle_it 3.373 r_mcbond_it 2.271 r_angle_refined_deg 1.592 r_angle_other_deg 0.876
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.132 r_dihedral_angle_4_deg 18.732 r_dihedral_angle_3_deg 14.549 r_scangle_it 7.573 r_dihedral_angle_1_deg 7.207 r_scbond_it 5.647 r_mcangle_it 3.373 r_mcbond_it 2.271 r_angle_refined_deg 1.592 r_angle_other_deg 0.876 r_mcbond_other 0.531 r_nbd_refined 0.212 r_nbtor_refined 0.184 r_symmetry_vdw_refined 0.18 r_nbd_other 0.179 r_symmetry_vdw_other 0.175 r_xyhbond_nbd_refined 0.153 r_chiral_restr 0.09 r_nbtor_other 0.089 r_symmetry_hbond_refined 0.056 r_bond_refined_d 0.017 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1666 Nucleic Acid Atoms Solvent Atoms 33 Heterogen Atoms 1
Software Software Software Name Purpose MolProbity model building SOLVE phasing REFMAC refinement SCALA data scaling PDB_EXTRACT data extraction MAR345 data collection MOSFLM data reduction CCP4 data scaling