☰ Navigation Tabs
Crystal structure of acyl-CoA dehydrogenase from Geobacillus kaustophilus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 9.4 293 USING 4 MICROLITER DROPS CONTAINING EQUAL VOLUMES OF PROTEIN CONCENTRATE (7.75 mg/ml) AND RESERVOIR SOLUTION CONTAINING 40% v/v MPD, 0.10M CHES (pH 9.4), VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.93 58.03
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 119.276 α = 90 b = 119.276 β = 90 c = 124.452 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2006-11-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-BM 0.97903 APS 22-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 50 99.5 0.097 15.1 15.9 94229
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.86 96.3 0.499 7.3 9032
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.8 30 94153 94153 4715 99.48 0.206 0.206 0.205 0.204 0.226 0.2263 RANDOM 20.529
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.5 0.25 0.5 -0.75
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.355 r_dihedral_angle_4_deg 14.162 r_dihedral_angle_3_deg 13.19 r_dihedral_angle_1_deg 4.873 r_scangle_it 2.668 r_scbond_it 1.666 r_angle_refined_deg 1.111 r_mcangle_it 0.963 r_mcbond_it 0.656 r_nbtor_refined 0.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.355 r_dihedral_angle_4_deg 14.162 r_dihedral_angle_3_deg 13.19 r_dihedral_angle_1_deg 4.873 r_scangle_it 2.668 r_scbond_it 1.666 r_angle_refined_deg 1.111 r_mcangle_it 0.963 r_mcbond_it 0.656 r_nbtor_refined 0.3 r_symmetry_vdw_refined 0.208 r_symmetry_hbond_refined 0.198 r_nbd_refined 0.197 r_xyhbond_nbd_refined 0.132 r_chiral_restr 0.078 r_bond_refined_d 0.009 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6032 Nucleic Acid Atoms Solvent Atoms 566 Heterogen Atoms 106
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction SERGUI data collection HKL-2000 data reduction SOLVE phasing