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Crystal structure of universal stress protein from Nitrosomonas europaea
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7.5 293 0.2M Sodium chloride, 0.1M HEPES pH 7.5, 25% PEG3350, 2% Isopropanol, VAPOR DIFFUSION, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.14 42.47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 76 α = 90 b = 76 β = 90 c = 42.987 γ = 120
Symmetry Space Group P 3 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 Mirrors 2007-02-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97918 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.25 50 97.6 0.06 0.06 58.5 11.1 6882 6882 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.25 2.29 81.5 0.486 0.486 2.9 7.7 277
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.25 50 6538 6538 329 97.57 0.19758 0.19758 0.19471 0.193 0.25455 0.2536 RANDOM 52.42
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.8 -0.9 -1.8 2.7
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.88 r_dihedral_angle_3_deg 13.601 r_dihedral_angle_4_deg 13.282 r_dihedral_angle_1_deg 8.463 r_scangle_it 4.252 r_scbond_it 2.736 r_mcangle_it 1.74 r_angle_refined_deg 1.563 r_mcbond_it 1.182 r_nbtor_refined 0.302
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.88 r_dihedral_angle_3_deg 13.601 r_dihedral_angle_4_deg 13.282 r_dihedral_angle_1_deg 8.463 r_scangle_it 4.252 r_scbond_it 2.736 r_mcangle_it 1.74 r_angle_refined_deg 1.563 r_mcbond_it 1.182 r_nbtor_refined 0.302 r_symmetry_hbond_refined 0.254 r_nbd_refined 0.214 r_symmetry_vdw_refined 0.211 r_xyhbond_nbd_refined 0.136 r_chiral_restr 0.113 r_bond_refined_d 0.017 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 936 Nucleic Acid Atoms Solvent Atoms 40 Heterogen Atoms 2
Software Software Software Name Purpose REFMAC refinement HKL-2000 data collection HKL-2000 data reduction HKL-2000 data scaling HKL-3000 phasing SHELXD phasing SHELXE model building CCP4 phasing MLPHARE phasing DM phasing O model building Coot model building SOLVE phasing RESOLVE phasing ARP/wARP model building