☰ Navigation Tabs
F258I mutant of EXO-B-(1,3)-GLUCANASE FROM CANDIDA ALBICANS at 1.9 A
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1EQP PDB ENTRY 1EQP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.3 293 PEG 8000, Hepes, CaCl2, pH 7.3, temperature 293K, VAPOR DIFFUSION, HANGING DROP
Crystal Properties Matthews coefficient Solvent content 2.08 40.83
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 60.33 α = 90 b = 65.39 β = 90 c = 96.49 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 293 IMAGE PLATE RIGAKU RAXIS II 1999-05-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU200 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 32.65 98.89 0.052 30774 30432
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1EQP 1.9 32.65 30774 30432 1256 98.89 0.135 0.134 0.1422 0.168 0.1721 RANDOM 18.389
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.239 r_dihedral_angle_4_deg 15.909 r_dihedral_angle_3_deg 11.58 r_dihedral_angle_1_deg 5.935 r_scangle_it 3.703 r_scbond_it 2.486 r_mcangle_it 1.556 r_angle_refined_deg 1.354 r_mcbond_it 1.007 r_angle_other_deg 0.966
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.239 r_dihedral_angle_4_deg 15.909 r_dihedral_angle_3_deg 11.58 r_dihedral_angle_1_deg 5.935 r_scangle_it 3.703 r_scbond_it 2.486 r_mcangle_it 1.556 r_angle_refined_deg 1.354 r_mcbond_it 1.007 r_angle_other_deg 0.966 r_symmetry_vdw_other 0.249 r_mcbond_other 0.243 r_nbd_refined 0.222 r_symmetry_hbond_refined 0.201 r_nbd_other 0.197 r_nbtor_refined 0.186 r_xyhbond_nbd_refined 0.175 r_symmetry_vdw_refined 0.126 r_chiral_restr 0.089 r_nbtor_other 0.088 r_bond_refined_d 0.014 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3211 Nucleic Acid Atoms Solvent Atoms 334 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction DENZO data reduction SCALEPACK data scaling AMoRE phasing