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Lysozyme Cocrystallized with Tris-dipicolinate Eu complex
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.1 293 0.3M NaCl, 0.1M MES, pH 5.1, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 1.96 37.25
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.266 α = 90 b = 33.779 β = 108.22 c = 69.683 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH MULTILAYER 2005-05-20 M SINGLE WAVELENGTH 2 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE ENRAF-NONIUS FR591 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.538 19.035 98.2 0.095 0.095 3.8 7.9 16398 10.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.538 1.63 92.7 0.102 0.102 5.8 5.2 2234
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.538 18.98 16396 832 98.03 0.14 0.14 0.138 0.1471 0.167 0.1727 RANDOM 10.09
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.24 0.11 -0.08 -0.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.67 r_dihedral_angle_3_deg 11.867 r_dihedral_angle_4_deg 9.844 r_sphericity_free 7.896 r_dihedral_angle_1_deg 5.876 r_angle_other_deg 4.073 r_scangle_it 2.367 r_scbond_it 1.663 r_angle_refined_deg 1.52 r_mcangle_it 1.044
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.67 r_dihedral_angle_3_deg 11.867 r_dihedral_angle_4_deg 9.844 r_sphericity_free 7.896 r_dihedral_angle_1_deg 5.876 r_angle_other_deg 4.073 r_scangle_it 2.367 r_scbond_it 1.663 r_angle_refined_deg 1.52 r_mcangle_it 1.044 r_mcbond_it 0.581 r_symmetry_vdw_other 0.301 r_nbd_other 0.236 r_nbd_refined 0.227 r_nbtor_refined 0.202 r_symmetry_hbond_refined 0.195 r_xyhbond_nbd_refined 0.158 r_symmetry_vdw_refined 0.142 r_nbtor_other 0.103 r_chiral_restr 0.08 r_metal_ion_refined 0.04 r_bond_refined_d 0.009 r_gen_planes_other 0.006 r_gen_planes_refined 0.005 r_bond_other_d r_mcbond_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1001 Nucleic Acid Atoms Solvent Atoms 198 Heterogen Atoms 162
Software Software Software Name Purpose SCALA data scaling SHARP phasing SOLOMON phasing REFMAC refinement PDB_EXTRACT data extraction MAR345 data collection XDS data reduction