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Ternary complex of profilin-actin with the poly-PRO-GAB domain of VASP*
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2PAV PDB entry 2PAV
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.4 277.15 150mM DL-malic acid pH 7.0, 18% PEG 3350, pH 7.4, VAPOR DIFFUSION, SITTING DROP, temperature 277.15K
Crystal Properties Matthews coefficient Solvent content 2.01 38.83
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 119.094 α = 90 b = 56.589 β = 104.75 c = 75.227 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 200 CCD ADSC QUANTUM 315 mirrors 2006-06-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 14-BM-C 0.90020 APS 14-BM-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 50 97.5 0.071 0.071 41.9 7.3 75393 75393 10.87
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.55 98.3 0.293 0.293 9 7.5 7487
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 2PAV 1.501 31.77 76665 76665 3855 99.06 0.158 0.158 0.156 0.1555 0.19 0.1902 RANDOM 10.847
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.04 0.09 -0.08 0.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.582 r_dihedral_angle_4_deg 17.353 r_dihedral_angle_3_deg 13.356 r_dihedral_angle_1_deg 6.447 r_scangle_it 4.118 r_scbond_it 2.788 r_mcangle_it 1.737 r_angle_refined_deg 1.695 r_mcbond_it 1.138 r_nbtor_refined 0.317
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.582 r_dihedral_angle_4_deg 17.353 r_dihedral_angle_3_deg 13.356 r_dihedral_angle_1_deg 6.447 r_scangle_it 4.118 r_scbond_it 2.788 r_mcangle_it 1.737 r_angle_refined_deg 1.695 r_mcbond_it 1.138 r_nbtor_refined 0.317 r_symmetry_vdw_refined 0.25 r_nbd_refined 0.229 r_xyhbond_nbd_refined 0.2 r_symmetry_hbond_refined 0.173 r_metal_ion_refined 0.133 r_chiral_restr 0.11 r_bond_refined_d 0.015 r_gen_planes_refined 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4049 Nucleic Acid Atoms Solvent Atoms 732 Heterogen Atoms 32
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction SCALEPACK data scaling AMoRE phasing