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Crystal structure of AQ2171 from Aquifex aeolicus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 4.69 291 25% w/v PEG 4000, 0.1 M Na Acetate, Acetic acid pH 4.69, 0.2M Ammonium Acetate, MICROBATCH, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.17 43.39
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 121.325 α = 90 b = 121.325 β = 90 c = 86.897 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2006-12-18 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL38B1 0.97930, 0.90000, 0.97945 SPring-8 BL38B1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 33.92 0.079 25.2 7.6 49520
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.46 100 0.353 4.39 7.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.4 33.92 45249 2352 100 0.21894 0.21639 0.2225 0.26771 0.223 RANDOM 24.88
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.474 r_dihedral_angle_4_deg 17.214 r_dihedral_angle_3_deg 16.252 r_dihedral_angle_1_deg 5.679 r_scangle_it 1.923 r_angle_refined_deg 1.219 r_scbond_it 1.192 r_mcangle_it 0.812 r_mcbond_it 0.531 r_nbtor_refined 0.296
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.474 r_dihedral_angle_4_deg 17.214 r_dihedral_angle_3_deg 16.252 r_dihedral_angle_1_deg 5.679 r_scangle_it 1.923 r_angle_refined_deg 1.219 r_scbond_it 1.192 r_mcangle_it 0.812 r_mcbond_it 0.531 r_nbtor_refined 0.296 r_nbd_refined 0.195 r_symmetry_vdw_refined 0.158 r_xyhbond_nbd_refined 0.131 r_symmetry_hbond_refined 0.125 r_chiral_restr 0.077 r_bond_refined_d 0.01 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9828 Nucleic Acid Atoms Solvent Atoms 218 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data collection HKL-2000 data reduction HKL-2000 data scaling SOLVE phasing