2P7C

Solution structure of the bacillus licheniformis BlaI monomeric form in complex with the blaP half-operator.


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D_isotopically_doubly_filtered_13C_15N_NOESY_HSQC2mM 13C,15N BlaI-NTD repressor in complex with blaP half-operator; 50mM NaH2PO4/Na2HPO4, 200mM KCl, 1mM EDTA, 1mM NaN390% H2O/10% D2O200mM7.6ambient298
23D_isotopically_doubly_filtered_13C_15N_NOESY_HSQC2mM 13C,15N BlaI-NTD repressor in complex with blaP half-operator; 50mM NaH2PO4/Na2HPO4, 200mM KCl, 1mM EDTA, 1mM NaN390% H2O/10% D2O200mM7.6ambient298
32D_filtered_NOESY2mM 13C,15N BlaI-NTD repressor in complex with blaP half-operator; 50mM NaH2PO4/Na2HPO4, 200mM KCl, 1mM EDTA, 1mM NaN3100% D2O200mM7.6ambient298
4methyl_selective_13C_HSQC0.1mM 13C,15N BlaI-NTD repressor; 50mM NaH2PO4/Na2HPO4, 200mM KCl, 1mM EDTA, 1mM NaN390% H2O/10% D2O200mM7.6ambient298
515N_HSQC0.1mM 13C,15N BlaI-NTD repressor; 50mM NaH2PO4/Na2HPO4, 200mM KCl, 1mM EDTA, 1mM NaN390% H2O/10% D2O200mM7.6ambient298
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1VarianINOVA600
2VarianINOVA800
NMR Refinement
MethodDetailsSoftware
simulated annealing from randomized coordinates followed by restrained molecular dynamics.structures used for refinement were generated from the docking procedure started with intermolecular nOe and ambiguous distance restraints proceeding from chemical shift mapping.Discover
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number250
Conformers Submitted Total Number10
Representative Model1 (lowest energy)
Additional NMR Experimental Information
DetailsThe structure was determined using a de novo docking approach.
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1structure solutionDiscover2.98Accelrys
2refinementDiscover2.98Accelrys
3processingNMRPipe2.3Delaglio
4collectionVnmrJ2.1Varian
5data analysisNMRView5.2.2Johnson