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crystal structure of a glycosyltransferase involved in the glycosylation of the major capsid of PBCV-1
Crystallization Crystal Properties Matthews coefficient Solvent content 2.29 46.19
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.375 α = 90 b = 63.535 β = 114.03 c = 44.76 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU 2006-11-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-D APS 23-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 50 97.7 0.091 13.2 3.1 9682
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.38 92.7 0.358 2.6 913
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 2.3 10 9530 450 97.18 0.193 0.19 0.192 0.243 0.2351 RANDOM 38.33
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.7 1.51 -1.03 -0.44
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.945 r_dihedral_angle_4_deg 18.567 r_dihedral_angle_3_deg 13.488 r_dihedral_angle_1_deg 5.791 r_scangle_it 2.291 r_scbond_it 1.519 r_angle_refined_deg 1.282 r_mcangle_it 1.099 r_mcbond_it 0.68 r_nbtor_refined 0.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.945 r_dihedral_angle_4_deg 18.567 r_dihedral_angle_3_deg 13.488 r_dihedral_angle_1_deg 5.791 r_scangle_it 2.291 r_scbond_it 1.519 r_angle_refined_deg 1.282 r_mcangle_it 1.099 r_mcbond_it 0.68 r_nbtor_refined 0.31 r_nbd_refined 0.195 r_symmetry_vdw_refined 0.158 r_xyhbond_nbd_refined 0.15 r_chiral_restr 0.088 r_symmetry_hbond_refined 0.012 r_bond_refined_d 0.011 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1699 Nucleic Acid Atoms Solvent Atoms 35 Heterogen Atoms 26
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data reduction