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Crystal structure of a CorC_HlyC domain from Haemophilus ducreyi
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 291 0.05M Calcium chloride, 0.1M Bis-Tris pH 6.5, 30% PEG MME 550, VAPOR DIFFUSION, SITTING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 1.75 29.85
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 29.552 α = 90 b = 58.667 β = 90 c = 87.434 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2006-08-24 M MAD 2 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97932, 0.97943 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 50 92.9 0.1 8.4 6.1 13730 13730 -3 23
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.86 61.9 0.315 4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.8 48.74 13684 13684 685 92.87 0.21054 0.20793 0.2059 0.26189 0.2592 RANDOM 28.758
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.43 3.34 -0.91
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.181 r_dihedral_angle_4_deg 16.831 r_dihedral_angle_3_deg 15.378 r_dihedral_angle_1_deg 6.077 r_scangle_it 3.818 r_scbond_it 2.807 r_angle_refined_deg 1.552 r_mcangle_it 1.425 r_mcbond_it 1.246 r_nbtor_refined 0.315
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.181 r_dihedral_angle_4_deg 16.831 r_dihedral_angle_3_deg 15.378 r_dihedral_angle_1_deg 6.077 r_scangle_it 3.818 r_scbond_it 2.807 r_angle_refined_deg 1.552 r_mcangle_it 1.425 r_mcbond_it 1.246 r_nbtor_refined 0.315 r_nbd_refined 0.221 r_xyhbond_nbd_refined 0.185 r_symmetry_vdw_refined 0.185 r_symmetry_hbond_refined 0.184 r_chiral_restr 0.11 r_bond_refined_d 0.013 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1388 Nucleic Acid Atoms Solvent Atoms 98 Heterogen Atoms 8
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction SBC-Collect data collection HKL-2000 data reduction autoSHARP phasing HKL-3000 phasing SHELXD phasing SHELXE model building MLPHARE phasing DM phasing SOLVE phasing RESOLVE phasing ARP/wARP model building CCP4 phasing O model building Coot model building