☰ Navigation Tabs
Complex of a camelid single-domain vhh antibody fragment with RNASE A at 1.1A resolution: SE5B-ORTHO-1 crystal form with five se-met sites (L4M, M34, M51, F68M, M83) in vhh scaffold.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 5.5 295 HAMPTON RESEARCH INDEX SCREEN, SOLUTION #74: LI2SO4, PEG 3350, BIS-TRIS BUFFER, PH 5.5, VAPOR DIFFUSION, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.11 41.69
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 73.447 α = 90 b = 73.07 β = 90 c = 42.539 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 MIRRORS 2004-04-01 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-ID 0.97955,0.97934 APS 17-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.1 20 97.2 4.9 90838 90838
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.1 20 86276 4562 97.16 0.17368 0.17368 0.1726 0.1744 0.19468 0.1969 RANDOM 17.278
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.13 0.51 0.62
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.086 r_dihedral_angle_4_deg 11.897 r_dihedral_angle_3_deg 11.316 r_dihedral_angle_1_deg 6.222 r_sphericity_bonded 6.088 r_scangle_it 5.132 r_scbond_it 4.373 r_rigid_bond_restr 3.605 r_mcangle_it 3.34 r_mcbond_it 2.603
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.086 r_dihedral_angle_4_deg 11.897 r_dihedral_angle_3_deg 11.316 r_dihedral_angle_1_deg 6.222 r_sphericity_bonded 6.088 r_scangle_it 5.132 r_scbond_it 4.373 r_rigid_bond_restr 3.605 r_mcangle_it 3.34 r_mcbond_it 2.603 r_angle_refined_deg 1.697 r_symmetry_vdw_refined 0.21 r_nbd_refined 0.205 r_symmetry_hbond_refined 0.147 r_xyhbond_nbd_refined 0.122 r_chiral_restr 0.095 r_bond_refined_d 0.017 r_gen_planes_refined 0.009 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_sphericity_free
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1883 Nucleic Acid Atoms Solvent Atoms 319 Heterogen Atoms 10
Software Software Software Name Purpose REFMAC refinement HKL-3000 data collection HKL-3000 data reduction HKL-3000 data scaling SOLVE phasing