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Complex of a camelid single-domain vhh antibody fragment with RNASE A at 1.65A resolution: SE3-mono-1 crystal form with three se-met sites (M34, M51, M83) in vhh scaffold
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7 295 HAMPTON RESEARCH INDEX SCREEN, SOLUTION #89: PEG 3350, SUCCINIC ACID, PH 7.0, VAPOR DIFFUSION, temperature 295K
Crystal Properties Matthews coefficient Solvent content 1.85 33.61
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 40.257 α = 90 b = 54.435 β = 108.45 c = 48.054 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 MIRRORS 2004-04-01 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-ID 0.97955, 0.97935 APS 17-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.65 20 99.9 0.063 3.2 23613
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.65 20 23613 1180 99.55 0.16052 0.16052 0.1583 0.1684 0.20227 0.2127 RANDOM 15.503
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.83 -1.17 -1.03 1.11
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.007 r_dihedral_angle_4_deg 16.467 r_dihedral_angle_3_deg 13.161 r_dihedral_angle_1_deg 6.432 r_scangle_it 3.584 r_scbond_it 2.701 r_mcangle_it 1.618 r_mcbond_it 1.329 r_angle_refined_deg 1.097 r_angle_other_deg 0.729
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.007 r_dihedral_angle_4_deg 16.467 r_dihedral_angle_3_deg 13.161 r_dihedral_angle_1_deg 6.432 r_scangle_it 3.584 r_scbond_it 2.701 r_mcangle_it 1.618 r_mcbond_it 1.329 r_angle_refined_deg 1.097 r_angle_other_deg 0.729 r_mcbond_other 0.318 r_symmetry_vdw_other 0.224 r_nbd_refined 0.198 r_nbd_other 0.197 r_xyhbond_nbd_refined 0.144 r_symmetry_hbond_refined 0.14 r_symmetry_vdw_refined 0.121 r_nbtor_other 0.083 r_chiral_restr 0.053 r_bond_refined_d 0.011 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1871 Nucleic Acid Atoms Solvent Atoms 225 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-3000 data collection HKL-3000 data reduction HKL-3000 data scaling SOLVE phasing