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Crystal structure of Rhesus rotavirus VP8* at 100K
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 303 1.7M (NH4)2SO4, 2.4% v/v PEG 400, 0.1M PIPES, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 303K
Crystal Properties Matthews coefficient Solvent content 2.05 40.01
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.887 α = 90 b = 47.887 β = 90 c = 129.932 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm mirrors 2004-07-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM30A 0.9794 ESRF BM30A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.55 55 96.1 0.087 6.2 11.8 21759
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.55 1.64 93.4 0.115 5.3 2991
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1.56 20 20572 1118 96.03 0.17336 0.17193 0.1708 0.20009 0.1984 RANDOM 12.573
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.4 -0.4 0.81
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.162 r_dihedral_angle_3_deg 11.4 r_dihedral_angle_1_deg 6.436 r_dihedral_angle_4_deg 5.08 r_scangle_it 2.108 r_scbond_it 1.48 r_angle_refined_deg 1.171 r_mcangle_it 0.897 r_mcbond_it 0.534 r_nbtor_refined 0.308
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.162 r_dihedral_angle_3_deg 11.4 r_dihedral_angle_1_deg 6.436 r_dihedral_angle_4_deg 5.08 r_scangle_it 2.108 r_scbond_it 1.48 r_angle_refined_deg 1.171 r_mcangle_it 0.897 r_mcbond_it 0.534 r_nbtor_refined 0.308 r_symmetry_hbond_refined 0.257 r_nbd_refined 0.205 r_symmetry_vdw_refined 0.158 r_xyhbond_nbd_refined 0.128 r_chiral_restr 0.079 r_bond_refined_d 0.007 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1280 Nucleic Acid Atoms Solvent Atoms 235 Heterogen Atoms 33
Software Software Software Name Purpose REFMAC refinement Xnemo data collection FIPBM30A data collection MOSFLM data reduction SCALA data scaling AMoRE phasing