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Crystal structure of the CorC_HlyC domain of a putative Corynebacterium glutamicum hemolysin
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 10.5 291 2M (NH4)2SO4, 0.1M Cacodylate pH 6.5, 0.2M NaCl, pH 10.5, VAPOR DIFFUSION, SITTING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.95 58.36
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.2 α = 90 b = 51.214 β = 90 c = 101.799 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD CUSTOM-MADE 2007-02-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 0.91946 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 50 97.4 0.064 13.3 7.7 13454 13454 -3 26.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.75 1.79 77.7 0.393 3.7 749
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.8 25.61 12619 12619 625 98.93 0.195 0.195 0.193 0.1904 0.228 0.2214 RANDOM 37.321
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01 1.87 -1.85
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.669 r_dihedral_angle_4_deg 19.255 r_dihedral_angle_3_deg 15.183 r_dihedral_angle_1_deg 5.774 r_scangle_it 3.478 r_scbond_it 2.141 r_angle_refined_deg 1.428 r_mcangle_it 1.331 r_mcbond_it 0.866 r_nbtor_refined 0.309
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.669 r_dihedral_angle_4_deg 19.255 r_dihedral_angle_3_deg 15.183 r_dihedral_angle_1_deg 5.774 r_scangle_it 3.478 r_scbond_it 2.141 r_angle_refined_deg 1.428 r_mcangle_it 1.331 r_mcbond_it 0.866 r_nbtor_refined 0.309 r_symmetry_hbond_refined 0.229 r_nbd_refined 0.219 r_xyhbond_nbd_refined 0.192 r_symmetry_vdw_refined 0.178 r_chiral_restr 0.103 r_bond_refined_d 0.013 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 776 Nucleic Acid Atoms Solvent Atoms 172 Heterogen Atoms 21
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling MLPHARE phasing DM phasing REFMAC refinement PDB_EXTRACT data extraction SBC-Collect data collection HKL-3000 data reduction HKL-3000 data scaling HKL-3000 phasing SHELXD phasing SHELXE model building SOLVE phasing RESOLVE phasing ARP/wARP model building CCP4 phasing O model building Coot model building