☰ Navigation Tabs
Crystal Structure of the subtype B wild type HIV protease complexed with TL-3 inhibitor
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other Crystal Structure of the multi-drug resistant mutant subtype B HIV protease complexed with TL-3 inhibitor
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.2 277 15% saturated ammonium sulfate solution, 6% (v/v) MPD, 85mM sodium citrate/170mM sodium phosphate, 0.02% sodium azide, pH 6.2, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.21 44.44
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 63.164 α = 90 b = 63.164 β = 90 c = 83.414 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 298 IMAGE PLATE MAR scanner 345 mm plate MIRRORS 1998-02-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU200
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 54.72 99.7 0.075 13.6 3.7 11047
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.21 100 0.414 2.7 3.7 1587
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT Crystal Structure of the multi-drug resistant mutant subtype B HIV protease complexed with TL-3 inhibitor 2.1 16.58 11011 1084 99.82 0.165 0.159 0.1591 0.219 0.2183 RANDOM 31.322
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.04 0.02 0.04 -0.06
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.853 r_dihedral_angle_4_deg 18.41 r_dihedral_angle_3_deg 17.262 r_sphericity_bonded 13.27 r_dihedral_angle_1_deg 6.534 r_scangle_it 3.911 r_mcangle_it 2.84 r_scbond_it 2.785 r_rigid_bond_restr 1.947 r_mcbond_it 1.638
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.853 r_dihedral_angle_4_deg 18.41 r_dihedral_angle_3_deg 17.262 r_sphericity_bonded 13.27 r_dihedral_angle_1_deg 6.534 r_scangle_it 3.911 r_mcangle_it 2.84 r_scbond_it 2.785 r_rigid_bond_restr 1.947 r_mcbond_it 1.638 r_angle_refined_deg 1.575 r_nbtor_refined 0.32 r_xyhbond_nbd_refined 0.23 r_nbd_refined 0.222 r_symmetry_vdw_refined 0.172 r_symmetry_hbond_refined 0.111 r_chiral_restr 0.085 r_bond_refined_d 0.015 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1520 Nucleic Acid Atoms Solvent Atoms 98 Heterogen Atoms 66
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction MAR345 data collection MOSFLM data reduction PHASER phasing