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Crystal Structure of Pyrococcus Abyssi Protein Homologue of Saccharomyces Cerevisiae NIP7P
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.2 4.1 M NACL, 100 MM HEPES, PH 7.2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K, pH 7.20
Crystal Properties Matthews coefficient Solvent content 2.34 47.51
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 88.492 α = 90 b = 90.284 β = 134.29 c = 63.347 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2004-02-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON LNLS BEAMLINE D03B-MX1 LNLS D03B-MX1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 31.67 99.9 0.049 7.1 33002
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.8 1.9 100 0.301 7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.8 31.67 31334 1673 99.9 0.21 0.207 0.2112 0.257 0.2067 RANDOM 29.7
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.715 r_scangle_it 5.098 r_scbond_it 3.083 r_mcangle_it 1.982 r_angle_refined_deg 1.71 r_mcbond_it 1.117 r_nbd_refined 0.235 r_symmetry_vdw_refined 0.235 r_symmetry_hbond_refined 0.224 r_xyhbond_nbd_refined 0.21
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.715 r_scangle_it 5.098 r_scbond_it 3.083 r_mcangle_it 1.982 r_angle_refined_deg 1.71 r_mcbond_it 1.117 r_nbd_refined 0.235 r_symmetry_vdw_refined 0.235 r_symmetry_hbond_refined 0.224 r_xyhbond_nbd_refined 0.21 r_chiral_restr 0.111 r_bond_refined_d 0.016 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_gen_planes_other r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2443 Nucleic Acid Atoms Solvent Atoms 248 Heterogen Atoms
Software Software Software Name Purpose SHARP phasing REFMAC refinement MAR345 data collection MOSFLM data reduction SCALA data scaling