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Crystal structure of a lectin from Canavalia maritima seeds (CML) in complex with man1-4man-OMe
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 293 4.5 - 6.5 sodium formate, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.2 44.18
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 69.446 α = 90 b = 69.446 β = 90 c = 161.454 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 130 mm M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON LNLS BEAMLINE D03B-MX1 1.438 LNLS D03B-MX1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 33.52 0.099 0.099 15.6 5.2 49112
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.1 2.155 0.348 0.39 5.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.1 33.52 46558 2489 96.56 0.17815 0.1749 0.1745 0.2392 0.2377 RANDOM 20.194
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.755 r_dihedral_angle_4_deg 20.123 r_dihedral_angle_3_deg 17.22 r_dihedral_angle_1_deg 10.454 r_scangle_it 4.078 r_scbond_it 2.859 r_angle_refined_deg 2.143 r_mcangle_it 1.819 r_mcbond_it 1.065 r_nbtor_refined 0.317
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.755 r_dihedral_angle_4_deg 20.123 r_dihedral_angle_3_deg 17.22 r_dihedral_angle_1_deg 10.454 r_scangle_it 4.078 r_scbond_it 2.859 r_angle_refined_deg 2.143 r_mcangle_it 1.819 r_mcbond_it 1.065 r_nbtor_refined 0.317 r_symmetry_vdw_refined 0.264 r_nbd_refined 0.239 r_symmetry_hbond_refined 0.225 r_xyhbond_nbd_refined 0.201 r_chiral_restr 0.157 r_metal_ion_refined 0.129 r_bond_refined_d 0.02 r_gen_planes_refined 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7106 Nucleic Acid Atoms Solvent Atoms 445 Heterogen Atoms 104
Software Software Software Name Purpose REFMAC refinement