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Crystal structure of a putative metal-binding protein (bce_2162) from bacillus cereus atcc 10987 at 2.10 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 9.5 277 NANODROP, 30.0% PEG 400, 0.1M CHES pH 9.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.1 41.35
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.47 α = 90 b = 77.82 β = 90 c = 87.07 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2007-02-11 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.91162, 0.97904, 0.97926 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 29.566 99.1 0.049 9.23 18527 34.89
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.19 97.8 0.306 2.45 3603
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.1 29.566 18482 943 99.04 0.223 0.223 0.221 0.2272 0.268 0.2677 RANDOM 38.995
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.11 -3.73 6.84
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.746 r_dihedral_angle_3_deg 12.243 r_dihedral_angle_4_deg 7.52 r_scangle_it 6.027 r_scbond_it 4.484 r_dihedral_angle_1_deg 3.416 r_mcangle_it 2.722 r_mcbond_it 1.893 r_angle_refined_deg 1.466 r_angle_other_deg 1.274
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.746 r_dihedral_angle_3_deg 12.243 r_dihedral_angle_4_deg 7.52 r_scangle_it 6.027 r_scbond_it 4.484 r_dihedral_angle_1_deg 3.416 r_mcangle_it 2.722 r_mcbond_it 1.893 r_angle_refined_deg 1.466 r_angle_other_deg 1.274 r_mcbond_other 0.326 r_symmetry_vdw_other 0.184 r_nbd_refined 0.172 r_nbtor_refined 0.161 r_symmetry_hbond_refined 0.122 r_nbd_other 0.121 r_xyhbond_nbd_refined 0.116 r_chiral_restr 0.095 r_nbtor_other 0.074 r_symmetry_vdw_refined 0.074 r_bond_refined_d 0.014 r_gen_planes_refined 0.005 r_bond_other_d 0.003 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2372 Nucleic Acid Atoms Solvent Atoms 98 Heterogen Atoms
Software Software Software Name Purpose MolProbity model building SHELX phasing REFMAC refinement XSCALE data scaling PDB_EXTRACT data extraction MAR345 data collection XDS data reduction SHELXD phasing SOLVE phasing