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NMB1532 protein from Neisseria meningitidis, unknown function
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 289 0.2 Magnesium chloride, 0.1 M Bis-Tris buffer, 25% PEG 3350, pH 5.5, VAPOR DIFFUSION, SITTING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 2.17 43.39
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 103.579 α = 90 b = 59.558 β = 110.32 c = 59.706 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2007-02-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97920 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.41 31.65 94.6 0.087 25.9 6.8 62114 62114 20.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.41 1.44 61.1 0.475 1.92 3.8 2641
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.41 31.65 58977 58977 3128 94.6 0.1696 0.1696 0.1678 0.2031 0.2015 RANDOM 17.165
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.97 -0.83 0.04 0.35
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.989 r_dihedral_angle_4_deg 17.832 r_dihedral_angle_3_deg 14.52 r_sphericity_free 7.191 r_scangle_it 4.984 r_dihedral_angle_1_deg 4.854 r_sphericity_bonded 4.547 r_scbond_it 3.564 r_mcangle_it 2.365 r_rigid_bond_restr 2.137
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.989 r_dihedral_angle_4_deg 17.832 r_dihedral_angle_3_deg 14.52 r_sphericity_free 7.191 r_scangle_it 4.984 r_dihedral_angle_1_deg 4.854 r_sphericity_bonded 4.547 r_scbond_it 3.564 r_mcangle_it 2.365 r_rigid_bond_restr 2.137 r_mcbond_it 1.694 r_angle_refined_deg 1.642 r_nbtor_refined 0.321 r_nbd_refined 0.23 r_xyhbond_nbd_refined 0.219 r_symmetry_vdw_refined 0.211 r_symmetry_hbond_refined 0.198 r_chiral_restr 0.102 r_bond_refined_d 0.017 r_gen_planes_refined 0.009 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2569 Nucleic Acid Atoms Solvent Atoms 425 Heterogen Atoms 20
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection HKL-3000 data reduction HKL-3000 data scaling SHELXD phasing MLPHARE phasing DM phasing SOLVE phasing RESOLVE phasing HKL-3000 phasing