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Crystal structure of SCMH1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2BIV PDB entry 2BIV
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 300 20% PEG3350, 0.2M Ammonium Citrate, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 300K
Crystal Properties Matthews coefficient Solvent content 2.37 48.17
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 95.735 α = 90 b = 95.735 β = 90 c = 43.602 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2006-12-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-ID 1.00000 APS 17-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 83.05 99.3 0.052 13.5 4.8 23100 23100
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 2BIV 1.75 83.05 21905 21905 1183 99.33 0.17065 0.16895 0.20351 0.25 RANDOM 25.106
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.9 -0.45 -0.9 1.35
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.687 r_dihedral_angle_4_deg 21.098 r_dihedral_angle_3_deg 13.696 r_dihedral_angle_1_deg 5.74 r_scangle_it 3.081 r_scbond_it 2.012 r_angle_refined_deg 1.396 r_mcangle_it 1.3 r_mcbond_it 0.818 r_nbtor_refined 0.308
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.687 r_dihedral_angle_4_deg 21.098 r_dihedral_angle_3_deg 13.696 r_dihedral_angle_1_deg 5.74 r_scangle_it 3.081 r_scbond_it 2.012 r_angle_refined_deg 1.396 r_mcangle_it 1.3 r_mcbond_it 0.818 r_nbtor_refined 0.308 r_nbd_refined 0.212 r_symmetry_vdw_refined 0.209 r_xyhbond_nbd_refined 0.154 r_symmetry_hbond_refined 0.108 r_chiral_restr 0.095 r_bond_refined_d 0.014 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1654 Nucleic Acid Atoms Solvent Atoms 208 Heterogen Atoms 16
Software Software Software Name Purpose REFMAC refinement CrystalClear data collection HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing