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ArhGAP9 PH domain in complex with Ins(1,4,5)P3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 298 26% PEG4000, 100mM HEPES, 10% glycerol, 5mM DTT, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.03 39.44
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 41.51 α = 90 b = 95.11 β = 90 c = 29.7 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 bent-flat Si-mirror (Rh coated) 2004-07-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 14-BM-D 0.9202 APS 14-BM-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 50 99.2 0.048 17 12 11480
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.8 1.86 93.6 0.361 1066
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.811 47.57 11190 534 99.22 0.2 0.199 0.197 0.222 0.1946 RANDOM 19.69
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.83 -0.39 1.22
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.769 r_dihedral_angle_4_deg 22.722 r_dihedral_angle_3_deg 15.562 r_dihedral_angle_1_deg 6.37 r_scangle_it 4.487 r_scbond_it 2.873 r_angle_refined_deg 1.982 r_mcangle_it 1.892 r_mcbond_it 1.804 r_nbtor_refined 0.302
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.769 r_dihedral_angle_4_deg 22.722 r_dihedral_angle_3_deg 15.562 r_dihedral_angle_1_deg 6.37 r_scangle_it 4.487 r_scbond_it 2.873 r_angle_refined_deg 1.982 r_mcangle_it 1.892 r_mcbond_it 1.804 r_nbtor_refined 0.302 r_symmetry_vdw_refined 0.23 r_nbd_refined 0.206 r_xyhbond_nbd_refined 0.199 r_symmetry_hbond_refined 0.155 r_chiral_restr 0.153 r_bond_refined_d 0.017 r_gen_planes_refined 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 861 Nucleic Acid Atoms Solvent Atoms 72 Heterogen Atoms 24
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection HKL-2000 data reduction