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Crystal structure of a predicted coding region AF_0060 from Archaeoglobus fulgidus DSM 4304
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.6 291 0.2M Potassium thiocyanate, 30% PEG 3350, pH 8.6, VAPOR DIFFUSION, SITTING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 3.49 64.79
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 80.083 α = 90 b = 80.083 β = 90 c = 106.771 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 mirrors 2007-02-10 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97920, 0.97940 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 35 99.7 0.121 30.6 14.6 23576 23576
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.4 100 0.79 4.1 12.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.1 34.67 22363 22363 1213 99.67 0.17006 0.17006 0.16919 0.1801 0.18655 0.1994 RANDOM 22.083
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.62 0.31 0.62 -0.93
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.197 r_dihedral_angle_4_deg 16.804 r_dihedral_angle_3_deg 15.421 r_dihedral_angle_1_deg 4.308 r_scangle_it 3.056 r_scbond_it 2.145 r_angle_refined_deg 1.329 r_mcangle_it 1.275 r_mcbond_it 0.987 r_angle_other_deg 0.898
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.197 r_dihedral_angle_4_deg 16.804 r_dihedral_angle_3_deg 15.421 r_dihedral_angle_1_deg 4.308 r_scangle_it 3.056 r_scbond_it 2.145 r_angle_refined_deg 1.329 r_mcangle_it 1.275 r_mcbond_it 0.987 r_angle_other_deg 0.898 r_symmetry_vdw_other 0.382 r_nbd_refined 0.216 r_symmetry_vdw_refined 0.199 r_mcbond_other 0.193 r_nbtor_refined 0.19 r_xyhbond_nbd_refined 0.19 r_nbd_other 0.189 r_nbtor_other 0.088 r_chiral_restr 0.083 r_symmetry_hbond_refined 0.071 r_bond_refined_d 0.014 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1489 Nucleic Acid Atoms Solvent Atoms 124 Heterogen Atoms 8
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection HKL-3000 data reduction HKL-3000 data scaling HKL-3000 phasing SHELXD phasing MLPHARE phasing DM phasing RESOLVE phasing ARP/wARP model building