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The crystal structure of OspA mutant
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2G8C PDB entry 2G8C
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 293 18% PEG4000, 8.5% isopropanol, 0.1M HEPES, 15% Glycerol, pH 7, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.67 53.94
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 37.004 α = 90 b = 57.602 β = 95.43 c = 67.746 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2005-11-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-ID 1.0000 APS 17-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 50 99.8 0.067 24.26 5.4 54582 28857
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.75 1.81 98.1 0.623 2.37 5.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 2G8C 1.8 20 25029 25029 1340 99.96 0.18723 0.18723 0.18526 0.208 0.22365 0.2484 RANDOM 27.3
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.05 0.19 1.56 -1.57
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.079 r_dihedral_angle_4_deg 20.063 r_dihedral_angle_3_deg 12.179 r_dihedral_angle_1_deg 5.479 r_scangle_it 3.114 r_scbond_it 2.254 r_angle_refined_deg 1.365 r_mcangle_it 1.18 r_mcbond_it 1.035 r_angle_other_deg 0.86
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.079 r_dihedral_angle_4_deg 20.063 r_dihedral_angle_3_deg 12.179 r_dihedral_angle_1_deg 5.479 r_scangle_it 3.114 r_scbond_it 2.254 r_angle_refined_deg 1.365 r_mcangle_it 1.18 r_mcbond_it 1.035 r_angle_other_deg 0.86 r_symmetry_hbond_refined 0.208 r_nbd_refined 0.2 r_symmetry_vdw_other 0.182 r_mcbond_other 0.17 r_nbd_other 0.166 r_nbtor_refined 0.147 r_xyhbond_nbd_refined 0.133 r_symmetry_vdw_refined 0.109 r_chiral_restr 0.107 r_nbtor_other 0.07 r_bond_refined_d 0.017 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1929 Nucleic Acid Atoms Solvent Atoms 293 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-3000 data collection HKL-3000 data reduction HKL-3000 data scaling MOLREP phasing