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THERMUS THERMOPHILUS AMYLOMALTASE AT pH 5.6
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1CWY
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.6 SODIUM MALONATE, PH 5.6, 1 mM DTT, pH 5.60, VAPOR DIFFUSION, HANGING DROP
Crystal Properties Matthews coefficient Solvent content 3.6 65.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 93.801 α = 90 b = 93.801 β = 90 c = 154.769 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH PREMIRROR, TRIANGULAR MONOCHROMATOR, BENT MIRROR 2004-01-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE BW7A 0.830 EMBL/DESY, HAMBURG BW7A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 99 86.9 0.079 9 25247
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.59 92 0.422 1.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1CWY 2.5 34.92 23870 1246 90.44 0.22295 0.22018 0.2189 0.27641 0.2749 RANDOM 45.449
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.26 0.13 0.26 -0.4
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.197 r_dihedral_angle_4_deg 21.184 r_dihedral_angle_3_deg 20.679 r_scangle_it 3.766 r_dihedral_angle_1_deg 2.983 r_scbond_it 2.345 r_mcangle_it 1.625 r_angle_refined_deg 1.573 r_mcbond_it 0.868 r_nbtor_refined 0.326
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.197 r_dihedral_angle_4_deg 21.184 r_dihedral_angle_3_deg 20.679 r_scangle_it 3.766 r_dihedral_angle_1_deg 2.983 r_scbond_it 2.345 r_mcangle_it 1.625 r_angle_refined_deg 1.573 r_mcbond_it 0.868 r_nbtor_refined 0.326 r_nbd_refined 0.22 r_symmetry_vdw_refined 0.165 r_xyhbond_nbd_refined 0.154 r_chiral_restr 0.124 r_symmetry_hbond_refined 0.069 r_gen_planes_refined 0.024 r_bond_refined_d 0.009 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4061 Nucleic Acid Atoms Solvent Atoms 102 Heterogen Atoms 13
Software Software Software Name Purpose MOLREP phasing REFMAC refinement MAR345 data collection DENZO data reduction SCALEPACK data scaling