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Crystal structure of oleoyl thioesterase (putative) (NP_784467.1) from Lactobacillus plantarum at 2.00 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.6 277 NANODROP, 1.6M (NH4)2SO4, 20.0% Glycerol, 0.1M Acetate pH 4.6, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3.17 61.22
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 106.524 α = 90 b = 106.524 β = 90 c = 234.378 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 1m long Rh coated bent cylindrical mirror for horizontal and vertical focusing 2007-01-28 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL1-5 0.979224, 0.978748, 0.918381 SSRL BL1-5
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 72.548 99.8 0.11 0.11 6.1 6 53741 24.27
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.11 99.5 0.691 0.691 1 6.1 7646
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2 72.548 53697 2725 99.65 0.206 0.206 0.204 0.2093 0.242 0.2469 RANDOM 29.521
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.09 -0.05 -0.09 0.14
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 24.771 r_dihedral_angle_4_deg 10.058 r_dihedral_angle_3_deg 8.382 r_scangle_it 4.577 r_scbond_it 3.307 r_dihedral_angle_1_deg 2.655 r_mcangle_it 1.907 r_angle_refined_deg 1.877 r_angle_other_deg 1.731 r_mcbond_it 1.289
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 24.771 r_dihedral_angle_4_deg 10.058 r_dihedral_angle_3_deg 8.382 r_scangle_it 4.577 r_scbond_it 3.307 r_dihedral_angle_1_deg 2.655 r_mcangle_it 1.907 r_angle_refined_deg 1.877 r_angle_other_deg 1.731 r_mcbond_it 1.289 r_mcbond_other 0.262 r_nbtor_refined 0.128 r_symmetry_vdw_refined 0.125 r_nbd_refined 0.123 r_nbd_other 0.106 r_chiral_restr 0.087 r_symmetry_vdw_other 0.084 r_xyhbond_nbd_refined 0.06 r_nbtor_other 0.056 r_symmetry_hbond_refined 0.034 r_bond_refined_d 0.017 r_gen_planes_refined 0.007 r_bond_other_d 0.005 r_gen_planes_other 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4087 Nucleic Acid Atoms Solvent Atoms 443 Heterogen Atoms 104
Software Software Software Name Purpose MolProbity model building SOLVE phasing REFMAC refinement SCALA data scaling PDB_EXTRACT data extraction ADSC data collection MOSFLM data reduction CCP4 data scaling