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Crystal structure of E. coli RdgC
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 283 10% (w/v) PEG1000, 0.2 M Ca chloride, 0.1 M HEPES, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 283K
Crystal Properties Matthews coefficient Solvent content 3.05 59.61
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.425 α = 90 b = 95.683 β = 90 c = 171.576 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 180 CCD ADSC QUANTUM 315 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 19.8 98.5 0.06 6.7 29976 29976
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.4 19.8 29976 3355 98.22 0.24107 0.23176 0.2271 0.32641 0.3208 RANDOM 51.844
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.15 -0.04 0.19
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.355 r_dihedral_angle_4_deg 24.254 r_dihedral_angle_3_deg 23.511 r_dihedral_angle_1_deg 8.862 r_scangle_it 6.301 r_scbond_it 4.621 r_mcangle_it 2.793 r_angle_refined_deg 2.772 r_mcbond_it 1.897 r_nbtor_refined 0.309
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.355 r_dihedral_angle_4_deg 24.254 r_dihedral_angle_3_deg 23.511 r_dihedral_angle_1_deg 8.862 r_scangle_it 6.301 r_scbond_it 4.621 r_mcangle_it 2.793 r_angle_refined_deg 2.772 r_mcbond_it 1.897 r_nbtor_refined 0.309 r_symmetry_vdw_refined 0.275 r_nbd_refined 0.265 r_xyhbond_nbd_refined 0.206 r_chiral_restr 0.202 r_symmetry_hbond_refined 0.155 r_metal_ion_refined 0.116 r_bond_refined_d 0.033 r_gen_planes_refined 0.012 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4722 Nucleic Acid Atoms Solvent Atoms 82 Heterogen Atoms 2
Software Software Software Name Purpose REFMAC refinement ADSC data collection MOSFLM data reduction CCP4 data scaling SOLVE phasing