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Crystal structure of a lectin from Canavalia gladiata (CGL) in complex with man1-2man-OMe
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 293 pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.39 48.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 63.887 α = 90 b = 86.198 β = 90 c = 88.735 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 130 mm 2006-04-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON LNLS BEAMLINE D03B-MX1 LNLS D03B-MX1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 21.03 5.2 0.061 6.1 7.6 19.2 39568
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.539 0.061 6.1 7.6 19.2 39568
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.5 20.77 37554 1984 99.92 0.21381 0.21295 0.2088 0.22998 0.2251 RANDOM 12.625
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.18 r_dihedral_angle_4_deg 18.734 r_dihedral_angle_3_deg 13.709 r_dihedral_angle_1_deg 7.581 r_scangle_it 3.12 r_scbond_it 2.024 r_angle_refined_deg 1.54 r_mcangle_it 1.401 r_mcbond_it 0.805 r_nbtor_refined 0.32
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.18 r_dihedral_angle_4_deg 18.734 r_dihedral_angle_3_deg 13.709 r_dihedral_angle_1_deg 7.581 r_scangle_it 3.12 r_scbond_it 2.024 r_angle_refined_deg 1.54 r_mcangle_it 1.401 r_mcbond_it 0.805 r_nbtor_refined 0.32 r_symmetry_vdw_refined 0.229 r_nbd_refined 0.219 r_symmetry_hbond_refined 0.172 r_xyhbond_nbd_refined 0.129 r_metal_ion_refined 0.105 r_chiral_restr 0.099 r_bond_refined_d 0.011 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1805 Nucleic Acid Atoms Solvent Atoms 146 Heterogen Atoms 26
Software Software Software Name Purpose REFMAC refinement MAR345 data collection MOSFLM data reduction SCALA data scaling MOLREP phasing