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The first domain of L1 from Thermus thermophilus
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other The first domain of L1 from Thermus thermophilus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 8.5 277 30% v/v polyethylenglycol 4K, 100 mM Tris-HCl, 200 mM acetate Na, pH 8.5, VAPOR DIFFUSION, temperature 277K
Crystal Properties Matthews coefficient Solvent content 1.86 33.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 31.7 α = 90 b = 45.32 β = 100.74 c = 37.89 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2006-03-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.55 15 94.4 0.16 0.119 8.8 3.3 3594 3392 52.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.55 2.6 89.1 0.431 0.351 3.5 3 202
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT The first domain of L1 from Thermus thermophilus 2.55 15 3356 3356 154 100 0.18147 0.18147 0.17737 0.1767 0.26973 0.2641 RANDOM 34.255
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.19 -0.07 -0.46 2.62
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 22.426 r_scangle_it 12.318 r_mcangle_it 11.289 r_dihedral_angle_3_deg 10.321 r_scbond_it 9.543 r_mcbond_it 9.195 r_dihedral_angle_4_deg 5.82 r_dihedral_angle_1_deg 2.412 r_angle_refined_deg 1.32 r_nbtor_refined 0.317
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 22.426 r_scangle_it 12.318 r_mcangle_it 11.289 r_dihedral_angle_3_deg 10.321 r_scbond_it 9.543 r_mcbond_it 9.195 r_dihedral_angle_4_deg 5.82 r_dihedral_angle_1_deg 2.412 r_angle_refined_deg 1.32 r_nbtor_refined 0.317 r_nbd_refined 0.238 r_symmetry_vdw_refined 0.228 r_symmetry_hbond_refined 0.173 r_xyhbond_nbd_refined 0.169 r_chiral_restr 0.086 r_bond_refined_d 0.01 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1002 Nucleic Acid Atoms Solvent Atoms 23 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing