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Crystal structure of a tellurite resistance protein of cog3793 (npun_f6341) from nostoc punctiforme pcc 73102 at 1.85 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 277 NANODROP, 10.0% 2-propanol, 0.2M Zn(OAc)2, 0.1M Cacodylate pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.22 44.66
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 38.49 α = 90 b = 56.19 β = 90 c = 152.3 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 1m long Rh coated bent cylindrical mirror for horizontal and vertical focusing 2007-01-28 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL1-5 0.911625, 0.979310, 0.979051 SSRL BL1-5
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 29.311 99.5 0.087 8.31 29051 15.09
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.85 1.92 98 0.415 1.99 5648
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.85 29.311 28991 1472 99.62 0.163 0.163 0.161 0.1706 0.213 0.2237 RANDOM 16.088
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.66 -0.48 -0.18
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.977 r_dihedral_angle_4_deg 15.504 r_dihedral_angle_3_deg 14.464 r_scangle_it 6.161 r_dihedral_angle_1_deg 4.796 r_scbond_it 4.789 r_mcangle_it 2.531 r_mcbond_it 1.855 r_angle_refined_deg 1.469 r_angle_other_deg 0.925
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.977 r_dihedral_angle_4_deg 15.504 r_dihedral_angle_3_deg 14.464 r_scangle_it 6.161 r_dihedral_angle_1_deg 4.796 r_scbond_it 4.789 r_mcangle_it 2.531 r_mcbond_it 1.855 r_angle_refined_deg 1.469 r_angle_other_deg 0.925 r_mcbond_other 0.389 r_symmetry_vdw_refined 0.224 r_nbd_refined 0.213 r_symmetry_vdw_other 0.196 r_nbd_other 0.195 r_nbtor_refined 0.189 r_symmetry_hbond_refined 0.181 r_xyhbond_nbd_refined 0.176 r_nbtor_other 0.088 r_chiral_restr 0.077 r_metal_ion_refined 0.039 r_symmetry_metal_ion_refined 0.034 r_bond_refined_d 0.017 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2534 Nucleic Acid Atoms Solvent Atoms 395 Heterogen Atoms 36
Software Software Software Name Purpose MolProbity model building SHELX phasing REFMAC refinement XSCALE data scaling PDB_EXTRACT data extraction ADSC data collection XDS data reduction autoSHARP phasing