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Macrophage migration inhibitory factor from Ancylostoma ceylanicum
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.6 293 2.0 M ammonium sulfate, 0.1 M sodium citrate, 0.2 M potassium sodium tartrate, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.64 66.19
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 115.34 α = 90 b = 115.34 β = 90 c = 199.26 γ = 120
Symmetry Space Group P 63 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2005-06-17 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD ADSC QUANTUM 315 2005-06-17 M MAD 1,2 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A NSLS X29A 2 SYNCHROTRON NSLS BEAMLINE X29A 0.9565,0.9791,0.9793 NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.6 100 90.05 0.116 3.8 14.5 88266 19.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.6 100 88266 4639 90.05 0.19532 0.19506 0.1903 0.20016 0.1958 RANDOM 20.194
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.12 -0.06 -0.12 0.18
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.286 r_dihedral_angle_4_deg 16.714 r_dihedral_angle_3_deg 12.916 r_dihedral_angle_1_deg 5.204 r_scangle_it 4.262 r_scbond_it 2.583 r_angle_refined_deg 1.241 r_mcangle_it 1.217 r_mcbond_it 0.606 r_nbtor_refined 0.305
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.286 r_dihedral_angle_4_deg 16.714 r_dihedral_angle_3_deg 12.916 r_dihedral_angle_1_deg 5.204 r_scangle_it 4.262 r_scbond_it 2.583 r_angle_refined_deg 1.241 r_mcangle_it 1.217 r_mcbond_it 0.606 r_nbtor_refined 0.305 r_symmetry_vdw_refined 0.213 r_nbd_refined 0.208 r_symmetry_hbond_refined 0.142 r_xyhbond_nbd_refined 0.105 r_chiral_restr 0.09 r_bond_refined_d 0.01 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3648 Nucleic Acid Atoms Solvent Atoms 278 Heterogen Atoms 20
Software Software Software Name Purpose REFMAC refinement ADSC data collection HKL-2000 data reduction SCALA data scaling SHELXS phasing