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human Thymidine Kinase 1 in complex with TP4A
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.8 298 2.8 M NaCl, 0.1M MES, 0.1M NaH2PO4, 0.1M KH2PO4, pH 4.8, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.9 57.59
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 80.98 α = 90 b = 80.98 β = 90 c = 156.36 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 225 mm 2004-03-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-BM 1.072 APS 22-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.08 19.5 95.4 0.075 10.54 5 36463 34789 -3 49.199
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.08 2.21 79 0.354 2.3 3.18 4526
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.3 19.5 23587 26191 2604 96.69 0.202 0.202 0.197 0.1987 0.249 0.2515 RANDOM 56.246
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 4.13 2.06 4.13 -6.19
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.557 r_dihedral_angle_4_deg 18.981 r_dihedral_angle_3_deg 18.747 r_dihedral_angle_1_deg 6.705 r_scangle_it 3.357 r_scbond_it 2.127 r_angle_refined_deg 1.811 r_mcangle_it 1.632 r_mcbond_it 0.938 r_nbtor_refined 0.312
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.557 r_dihedral_angle_4_deg 18.981 r_dihedral_angle_3_deg 18.747 r_dihedral_angle_1_deg 6.705 r_scangle_it 3.357 r_scbond_it 2.127 r_angle_refined_deg 1.811 r_mcangle_it 1.632 r_mcbond_it 0.938 r_nbtor_refined 0.312 r_symmetry_vdw_refined 0.309 r_nbd_refined 0.234 r_symmetry_hbond_refined 0.225 r_xyhbond_nbd_refined 0.208 r_chiral_restr 0.122 r_bond_refined_d 0.016 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2479 Nucleic Acid Atoms Solvent Atoms 160 Heterogen Atoms 68
Software Software Software Name Purpose XSCALE data scaling REFMAC refinement PDB_EXTRACT data extraction XDS data scaling XDS data reduction SOLVE phasing