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ArsR-like Transcriptional Regulator from Rhodococcus sp. RHA1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.5 295 0.1M Sodium acetate pH 4.5, 20% PEG3350, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 1.95 36.91
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 33.872 α = 90 b = 57.494 β = 96.54 c = 101.103 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD SBC-3 mirrors 2006-12-01 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 0.9794, 0.9792, 0.9717 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.54 28.94 92.4 0.086 7.9 8.1 52770 52770
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.54 1.6 52.4 0.359 2.43 3.7 2979
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.54 28.94 50095 50095 2681 92.49 0.191 0.191 0.188 0.1861 0.256 0.2514 RANDOM 23.861
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.11 0.23 0.84 -0.9
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.885 r_dihedral_angle_4_deg 18.875 r_dihedral_angle_3_deg 16.126 r_sphericity_free 6.661 r_sphericity_bonded 5.441 r_dihedral_angle_1_deg 4.951 r_scangle_it 4.854 r_scbond_it 3.267 r_mcangle_it 2.312 r_rigid_bond_restr 1.956
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.885 r_dihedral_angle_4_deg 18.875 r_dihedral_angle_3_deg 16.126 r_sphericity_free 6.661 r_sphericity_bonded 5.441 r_dihedral_angle_1_deg 4.951 r_scangle_it 4.854 r_scbond_it 3.267 r_mcangle_it 2.312 r_rigid_bond_restr 1.956 r_mcbond_it 1.57 r_angle_refined_deg 1.524 r_nbtor_refined 0.304 r_symmetry_vdw_refined 0.26 r_nbd_refined 0.248 r_symmetry_hbond_refined 0.225 r_xyhbond_nbd_refined 0.203 r_chiral_restr 0.1 r_bond_refined_d 0.015 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3303 Nucleic Acid Atoms Solvent Atoms 575 Heterogen Atoms 16
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection HKL-3000 data collection HKL-3000 data reduction HKL-3000 data scaling SHARP phasing