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Crystal structure of an osmc-like protein (gsu2788) from geobacter sulfurreducens at 1.50 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.6 277 NANODROP, 0.2M (NH4)2SO4, 25.0% PEG 4000, 0.1M Acetate, pH 4.6, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.25 45.39
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.24 α = 90 b = 83.01 β = 90 c = 95.45 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2007-01-07 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.91837, 0.97894, 0.97870 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 29.71 99.5 0.048 11.02 60730 12.19
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.55 97.7 0.311 2.37 9757
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.5 29.71 60667 3073 99.71 0.151 0.151 0.15 0.1516 0.168 0.1688 RANDOM 11.124
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.04 0.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.408 r_dihedral_angle_4_deg 18.389 r_dihedral_angle_3_deg 12.327 r_dihedral_angle_1_deg 5.402 r_scangle_it 3.73 r_scbond_it 2.353 r_angle_refined_deg 1.487 r_mcangle_it 1.371 r_angle_other_deg 0.827 r_mcbond_it 0.777
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.408 r_dihedral_angle_4_deg 18.389 r_dihedral_angle_3_deg 12.327 r_dihedral_angle_1_deg 5.402 r_scangle_it 3.73 r_scbond_it 2.353 r_angle_refined_deg 1.487 r_mcangle_it 1.371 r_angle_other_deg 0.827 r_mcbond_it 0.777 r_symmetry_vdw_other 0.265 r_nbd_refined 0.241 r_mcbond_other 0.24 r_nbd_other 0.201 r_nbtor_refined 0.177 r_xyhbond_nbd_refined 0.152 r_symmetry_hbond_refined 0.15 r_symmetry_vdw_refined 0.098 r_chiral_restr 0.092 r_nbtor_other 0.085 r_metal_ion_refined 0.071 r_bond_refined_d 0.016 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2783 Nucleic Acid Atoms Solvent Atoms 496 Heterogen Atoms 29
Software Software Software Name Purpose MolProbity model building SHELX phasing REFMAC refinement XSCALE data scaling PDB_EXTRACT data extraction MAR345 data collection XDS data reduction SHELXD phasing autoSHARP phasing