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CRYSTAL STRUCTURE OF A PUTATIVE MANNOSE-6-PHOSPHATE ISOMERASE (REUT_A1446) FROM RALSTONIA EUTROPHA JMP134 AT 2.10 A RESOLUTION
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 277 NANODROP, 1.5M (NH4)2SO4, 12.0% Glycerol, 0.1M TRIS-HCL, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.86 56.97
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 75.58 α = 90 b = 75.58 β = 90 c = 198.87 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2007-01-07 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.91837, 0.97876, 0.97904 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 28.41 99.8 0.135 8.69 34611 23.15
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.17 98.3 0.534 2.54 5368
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.1 28.41 34529 1740 99.84 0.168 0.168 0.166 0.1768 0.207 0.2165 RANDOM 20.641
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.2 0.2 -0.4
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.492 r_dihedral_angle_4_deg 16.998 r_dihedral_angle_3_deg 11.812 r_scangle_it 5.916 r_dihedral_angle_1_deg 4.998 r_scbond_it 4.328 r_mcangle_it 2.892 r_mcbond_it 2.022 r_angle_refined_deg 1.656 r_angle_other_deg 1.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.492 r_dihedral_angle_4_deg 16.998 r_dihedral_angle_3_deg 11.812 r_scangle_it 5.916 r_dihedral_angle_1_deg 4.998 r_scbond_it 4.328 r_mcangle_it 2.892 r_mcbond_it 2.022 r_angle_refined_deg 1.656 r_angle_other_deg 1.001 r_mcbond_other 0.701 r_symmetry_hbond_refined 0.271 r_xyhbond_nbd_refined 0.193 r_nbd_refined 0.185 r_nbd_other 0.182 r_nbtor_refined 0.176 r_xyhbond_nbd_other 0.167 r_symmetry_vdw_other 0.167 r_chiral_restr 0.138 r_nbtor_other 0.088 r_symmetry_vdw_refined 0.071 r_bond_refined_d 0.016 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3372 Nucleic Acid Atoms Solvent Atoms 462 Heterogen Atoms 51
Software Software Software Name Purpose MolProbity model building SOLVE phasing REFMAC refinement XSCALE data scaling PDB_EXTRACT data extraction MAR345 data collection XDS data reduction