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Crystal structure of plasmodium falciparum enoyl ACP reductase with triclosan reductase
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1NHD
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.6 298 2.35M (NH4)2SO4, 0.1M AcONa, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.36 47.99
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 132.305 α = 90 b = 132.305 β = 90 c = 82.911 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 120 IMAGE PLATE RIGAKU M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU 1.54178
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 30 97.67 21.69 18748 18311 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.8 2.9 99.68
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1NHD 2.8 93.66 18311 17379 931 97.9 0.19122 0.18689 0.1832 0.27371 0.2492 RANDOM 31.405
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.45 0.45 -0.89
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.349 r_dihedral_angle_4_deg 22.631 r_dihedral_angle_3_deg 21.272 r_dihedral_angle_1_deg 8.634 r_scangle_it 6.114 r_scbond_it 4.269 r_angle_refined_deg 3.261 r_mcangle_it 2.792 r_mcbond_it 1.804 r_symmetry_hbond_refined 0.401
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.349 r_dihedral_angle_4_deg 22.631 r_dihedral_angle_3_deg 21.272 r_dihedral_angle_1_deg 8.634 r_scangle_it 6.114 r_scbond_it 4.269 r_angle_refined_deg 3.261 r_mcangle_it 2.792 r_mcbond_it 1.804 r_symmetry_hbond_refined 0.401 r_nbtor_refined 0.355 r_nbd_refined 0.292 r_symmetry_vdw_refined 0.253 r_xyhbond_nbd_refined 0.222 r_chiral_restr 0.211 r_bond_refined_d 0.041 r_gen_planes_refined 0.016
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4416 Nucleic Acid Atoms Solvent Atoms 109 Heterogen Atoms 72
Software Software Software Name Purpose REFMAC refinement CrystalClear data collection HKL-2000 data reduction HKL-2000 data scaling XFIT data reduction