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Structure of transhydrogenase (dI.NAD+)2(dIII.H2NADPH)1 asymmetric complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1U2D
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 277 100mM Mes, 16% PEG 4K, 10% glycerol, 50mM ammonium sulphate , pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.77 55.56
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 72.194 α = 90 b = 74.451 β = 90 c = 204.844 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD MAR CCD 130 mm 2004-07-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-3 0.93300 ESRF ID14-3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.32 102.629 91.4 0.053 0.053 8.7 4.2 44362
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.32 2.45 69 0.317 0.317 2.3 3.6 4726
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1U2D 2.32 102.6 44314 2530 90.98 0.249 0.247 0.2525 0.275 0.2812 RANDOM 52.352
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.54 -0.25 -1.29
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.461 r_dihedral_angle_4_deg 16.154 r_dihedral_angle_3_deg 15.832 r_dihedral_angle_1_deg 5.845 r_angle_refined_deg 1.337 r_mcangle_it 1.326 r_mcbond_it 1.127 r_scangle_it 1.091 r_angle_other_deg 0.982 r_scbond_it 0.705
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.461 r_dihedral_angle_4_deg 16.154 r_dihedral_angle_3_deg 15.832 r_dihedral_angle_1_deg 5.845 r_angle_refined_deg 1.337 r_mcangle_it 1.326 r_mcbond_it 1.127 r_scangle_it 1.091 r_angle_other_deg 0.982 r_scbond_it 0.705 r_xyhbond_nbd_refined 0.168 r_mcbond_other 0.152 r_nbtor_refined 0.146 r_nbd_refined 0.14 r_nbd_other 0.129 r_symmetry_vdw_other 0.102 r_symmetry_hbond_refined 0.09 r_nbtor_other 0.079 r_chiral_restr 0.068 r_symmetry_vdw_refined 0.055 r_xyhbond_nbd_other 0.027 r_bond_refined_d 0.009 r_gen_planes_refined 0.003 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6756 Nucleic Acid Atoms Solvent Atoms 91 Heterogen Atoms 134
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction MOSFLM data reduction CCP4 data scaling