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CRYSTAL STRUCTURE OF A PROTEIN WITH UNKNOWN FUNCTION FROM DUF3224 FAMILY (SO_1590) FROM SHEWANELLA ONEIDENSIS MR-1 AT 1.84 A RESOLUTION
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.5 277 NANODROP, 0.2M Li2SO4, 2.5M NaCl, 0.1M Acetate pH 4.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.24 45.11
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.211 α = 90 b = 55.254 β = 90 c = 106.086 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2007-01-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.97883 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.84 29.79 99.9 0.11 0.11 10.5 4.7 24865 26.88
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.84 1.89 100 0.692 0.692 1.4 3.6 1805
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.84 29.788 24752 1258 99.89 0.18 0.18 0.178 0.1855 0.206 0.2126 RANDOM 27.276
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.88 0.56 -1.44
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 43.938 r_dihedral_angle_4_deg 18.332 r_dihedral_angle_3_deg 12.067 r_scangle_it 7.685 r_dihedral_angle_1_deg 6.86 r_scbond_it 5.615 r_mcangle_it 3.176 r_mcbond_it 2.433 r_angle_refined_deg 1.525 r_mcbond_other 0.829
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 43.938 r_dihedral_angle_4_deg 18.332 r_dihedral_angle_3_deg 12.067 r_scangle_it 7.685 r_dihedral_angle_1_deg 6.86 r_scbond_it 5.615 r_mcangle_it 3.176 r_mcbond_it 2.433 r_angle_refined_deg 1.525 r_mcbond_other 0.829 r_angle_other_deg 0.813 r_symmetry_vdw_refined 0.232 r_nbd_other 0.201 r_nbd_refined 0.193 r_symmetry_vdw_other 0.182 r_nbtor_refined 0.181 r_symmetry_hbond_refined 0.177 r_xyhbond_nbd_refined 0.174 r_chiral_restr 0.096 r_nbtor_other 0.086 r_bond_refined_d 0.018 r_gen_planes_refined 0.007 r_gen_planes_other 0.003 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1965 Nucleic Acid Atoms Solvent Atoms 195 Heterogen Atoms 8
Software Software Software Name Purpose MolProbity model building SHELX phasing REFMAC refinement SCALA data scaling PDB_EXTRACT data extraction MAR345 data collection MOSFLM data reduction CCP4 data scaling SHELXD phasing autoSHARP phasing