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The crystal structure of gene product SA0254 from Staphylocococcus aureus subsp. aureus N315
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 10.5 298 2M Ammonium sulfate, 0.1M CAPS, 0.2M Lithium sulfate, pH 10.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 4.42 72.14
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 116.104 α = 90 b = 116.104 β = 90 c = 86.185 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 mirrors 2006-08-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97940 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 50 99.84 0.093 28.57 14.5 19411 19380 2 50.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.668 98.61 0.568 2 10.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.6 48.17 19380 19380 1038 99.84 0.22595 0.22361 0.2397 0.27002 0.2687 RANDOM 50.097
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.08 -0.04 -0.08 0.12
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.737 r_dihedral_angle_4_deg 22.496 r_dihedral_angle_3_deg 20.206 r_dihedral_angle_1_deg 8.427 r_scangle_it 2.411 r_angle_refined_deg 1.798 r_scbond_it 1.615 r_mcangle_it 1.203 r_angle_other_deg 1.074 r_mcbond_it 1.011
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.737 r_dihedral_angle_4_deg 22.496 r_dihedral_angle_3_deg 20.206 r_dihedral_angle_1_deg 8.427 r_scangle_it 2.411 r_angle_refined_deg 1.798 r_scbond_it 1.615 r_mcangle_it 1.203 r_angle_other_deg 1.074 r_mcbond_it 1.011 r_nbd_refined 0.237 r_nbd_other 0.205 r_xyhbond_nbd_refined 0.204 r_nbtor_refined 0.197 r_symmetry_vdw_other 0.195 r_xyhbond_nbd_other 0.166 r_symmetry_vdw_refined 0.144 r_mcbond_other 0.119 r_chiral_restr 0.116 r_nbtor_other 0.091 r_symmetry_hbond_refined 0.071 r_bond_refined_d 0.016 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2592 Nucleic Acid Atoms Solvent Atoms 49 Heterogen Atoms 2
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection HKL-3000 data reduction HKL-3000 data scaling HKL-3000 phasing