☰ Navigation Tabs
Structure of LNR-HD (Negative Regulatory Region) from human Notch 2
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 298 100 mM BisTris, 200mM MgCl2, 18% PEG3350, 10% glycerol, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K 2 298 100mM Tris, 200mM MgCl2, 24% PEG3350, 10% glycerol, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.372 α = 90 b = 74.706 β = 90 c = 139.412 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 77.2 CCD ADSC QUANTUM 315 BEAMLINE X29 FEATURES HIGH- FLUX RADIATION DERIVED FROM A 54-POLE HARMONIC EMISSION UNDULATOR, A VERTICALLY FOCUSING MIRROR AND A HORIZONTALLY FOCUSING MONOCHROMATOR 2006-02-25 M SINGLE WAVELENGTH 2 1 x-ray 77.2 M SINGLE WAVELENGTH 3 1 x-ray 77.2 M SINGLE WAVELENGTH 4 1 x-ray 77.2 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2,3,4 2.003 30 97.2 0.075 15.5 4.9 31791 33
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2,3,4 2.003 2.07 98.1 0.405 4.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIRAS THROUGHOUT 2.003 30 31732 1603 97.1 0.229 0.226 0.2275 0.268 0.2631 RANDOM 49.12
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.22 -0.88 0.66
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.916 r_dihedral_angle_4_deg 14.322 r_dihedral_angle_3_deg 13.579 r_dihedral_angle_1_deg 5.348 r_scangle_it 1.645 r_angle_refined_deg 1.174 r_scbond_it 1.088 r_mcangle_it 0.677 r_mcbond_it 0.403 r_nbtor_refined 0.298
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.916 r_dihedral_angle_4_deg 14.322 r_dihedral_angle_3_deg 13.579 r_dihedral_angle_1_deg 5.348 r_scangle_it 1.645 r_angle_refined_deg 1.174 r_scbond_it 1.088 r_mcangle_it 0.677 r_mcbond_it 0.403 r_nbtor_refined 0.298 r_nbd_refined 0.212 r_symmetry_vdw_refined 0.133 r_metal_ion_refined 0.131 r_xyhbond_nbd_refined 0.13 r_chiral_restr 0.088 r_symmetry_hbond_refined 0.085 r_bond_refined_d 0.01 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3411 Nucleic Acid Atoms Solvent Atoms 164 Heterogen Atoms 67
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling SHARP phasing SOLOMON phasing REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data reduction