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Crystal structure of protein LPL1258 from Legionella pneumophila str. Philadelphia 1, Pfam DUF519
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 6.5 294 100mM Bis-Tris pH 6.5, 25% PEG 3350, 200mM Ammonium sulfate, VAPOR DIFFUSION, temperature 294K
Crystal Properties Matthews coefficient Solvent content 1.99 38.05
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.822 α = 90 b = 72.959 β = 90 c = 78.379 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2007-01-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A 0.97958 NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 53.4 99.8 0.079 0.079 21.8 8 18365 13.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.11 99.4 0.187 0.187 9.4 8.1 2619
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2 20 18361 18343 941 99.9 0.166 0.164 0.1668 0.21 0.207 RANDOM 14.162
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.43 -0.81 -0.62
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.557 r_dihedral_angle_4_deg 22.461 r_dihedral_angle_3_deg 14.815 r_dihedral_angle_1_deg 5.582 r_scangle_it 4.016 r_scbond_it 2.748 r_mcangle_it 1.704 r_angle_refined_deg 1.507 r_mcbond_it 1.033 r_nbtor_refined 0.315
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.557 r_dihedral_angle_4_deg 22.461 r_dihedral_angle_3_deg 14.815 r_dihedral_angle_1_deg 5.582 r_scangle_it 4.016 r_scbond_it 2.748 r_mcangle_it 1.704 r_angle_refined_deg 1.507 r_mcbond_it 1.033 r_nbtor_refined 0.315 r_symmetry_vdw_refined 0.212 r_nbd_refined 0.205 r_symmetry_hbond_refined 0.174 r_xyhbond_nbd_refined 0.163 r_chiral_restr 0.1 r_bond_refined_d 0.016 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2196 Nucleic Acid Atoms Solvent Atoms 163 Heterogen Atoms 15
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction CBASS data collection HKL-2000 data reduction HKL-2000 data scaling SHELXD phasing