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Putative antibiotic biosynthesis monooxygenase from Nitrosomonas europaea
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 291 0.2 M Sodium chloride, 0.1 M Bis-Tris buffer, 25% PEG3350, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.06 40.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.155 α = 90 b = 99.248 β = 90 c = 192.672 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD SBC-3 2006-11-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 0.97970 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.83 36.74 95.9 0.094 29.7 13.3 82843 82843 35.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.83 1.91 57.8 0.762 2.19 7.7 3788
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.83 36.74 78518 78518 4158 96.47 0.1914 0.1914 0.1895 0.2277 0.2507 RANDOM 19.436
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.37 -0.22 -0.15
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.983 r_dihedral_angle_4_deg 17.287 r_dihedral_angle_3_deg 15.663 r_dihedral_angle_1_deg 6.014 r_scangle_it 3.704 r_scbond_it 2.532 r_angle_refined_deg 1.516 r_mcangle_it 1.485 r_mcbond_it 1.058 r_nbtor_refined 0.308
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.983 r_dihedral_angle_4_deg 17.287 r_dihedral_angle_3_deg 15.663 r_dihedral_angle_1_deg 6.014 r_scangle_it 3.704 r_scbond_it 2.532 r_angle_refined_deg 1.516 r_mcangle_it 1.485 r_mcbond_it 1.058 r_nbtor_refined 0.308 r_symmetry_vdw_refined 0.258 r_nbd_refined 0.218 r_symmetry_hbond_refined 0.183 r_xyhbond_nbd_refined 0.167 r_chiral_restr 0.111 r_bond_refined_d 0.017 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6598 Nucleic Acid Atoms Solvent Atoms 609 Heterogen Atoms
Software Software Software Name Purpose SHELXD phasing MLPHARE phasing DM model building SOLVE phasing RESOLVE model building HKL-2000 data scaling SBC-Collect data collection HKL-3000 data reduction HKL-3000 data scaling DM phasing RESOLVE phasing HKL-3000 phasing REFMAC refinement