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Structural Insight Into the Transglycosylation Step Of Bacterial Cell Wall Biosynthesis : Donor Ligand Complex
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 291 100mM Na citrate, 0.1M NaCl, 0.1M MgCl2, 12% PEG 4000, pH 5.5, VAPOR DIFFUSION, SITTING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.59 52.52
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 79.565 α = 90 b = 212.211 β = 90 c = 91.635 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2006-08-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.2 0.9794 ALS 8.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 44.151 99.9 0.083 0.083 6.8 4.7 39086
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.8 2.95 100 0.565 0.565 1.2 4.9 5661
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.8 44.15 39038 1955 99.86 0.231 0.234 0.231 0.2366 0.28 0.2831 RANDOM 62.621
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -6.1 -5.48 11.58
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.095 r_dihedral_angle_3_deg 18.534 r_dihedral_angle_4_deg 17.221 r_dihedral_angle_1_deg 6.656 r_scangle_it 1.527 r_angle_refined_deg 1.332 r_scbond_it 1.023 r_mcangle_it 1.003 r_angle_other_deg 0.883 r_mcbond_it 0.648
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.095 r_dihedral_angle_3_deg 18.534 r_dihedral_angle_4_deg 17.221 r_dihedral_angle_1_deg 6.656 r_scangle_it 1.527 r_angle_refined_deg 1.332 r_scbond_it 1.023 r_mcangle_it 1.003 r_angle_other_deg 0.883 r_mcbond_it 0.648 r_symmetry_hbond_refined 0.293 r_nbd_refined 0.229 r_symmetry_vdw_other 0.205 r_nbtor_refined 0.188 r_nbd_other 0.184 r_symmetry_vdw_refined 0.171 r_xyhbond_nbd_refined 0.168 r_mcbond_other 0.095 r_nbtor_other 0.088 r_chiral_restr 0.073 r_bond_refined_d 0.011 r_gen_planes_refined 0.004 r_bond_other_d 0.003 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9710 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 168
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction ADSC data collection MOSFLM data reduction CCP4 data scaling SOLVE phasing