☰ Navigation Tabs
Crystal structure of a phou-like protein (so_3770) from shewanella oneidensis mr-1 at 2.00 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.8 277 NANODROP, 1.5M Sodium acetate, 0.1M Sodium cacodylate pH 6.8, VAPOR DIFFUSION, SITTING DROP, temperature 277K 2 VAPOR DIFFUSION, SITTING DROP 6.5 277 NANODROP, 1.0M Sodium citrate, 0.1M Sodium cacodylate pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 99.53 α = 90 b = 99.53 β = 90 c = 395.92 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2006-09-14 M SINGLE WAVELENGTH 2 2 x-ray 100 CCD ADSC QUANTUM 315 Flat mirror (vertical focusing) 2006-05-07 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.2 1.00000 ALS 8.2.2 2 SYNCHROTRON SSRL BEAMLINE BL11-1 0.918370, 0.979318, 0.979035 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 2 29.16 99.9 0.058 13.4 5.5 51605 36
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 2 2.05 100 0.623 5.5 3630
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2 29.16 51591 2634 99.84 0.205 0.205 0.203 0.2115 0.242 0.2476 RANDOM 39.759
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.45 1.22 2.45 -3.67
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.873 r_dihedral_angle_3_deg 12.753 r_dihedral_angle_4_deg 10.545 r_scangle_it 3.815 r_dihedral_angle_1_deg 2.981 r_scbond_it 2.459 r_angle_refined_deg 1.565 r_mcangle_it 1.353 r_angle_other_deg 1.006 r_mcbond_it 0.956
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.873 r_dihedral_angle_3_deg 12.753 r_dihedral_angle_4_deg 10.545 r_scangle_it 3.815 r_dihedral_angle_1_deg 2.981 r_scbond_it 2.459 r_angle_refined_deg 1.565 r_mcangle_it 1.353 r_angle_other_deg 1.006 r_mcbond_it 0.956 r_symmetry_vdw_other 0.309 r_symmetry_hbond_refined 0.291 r_nbd_refined 0.232 r_mcbond_other 0.212 r_xyhbond_nbd_refined 0.197 r_nbtor_refined 0.186 r_symmetry_vdw_refined 0.181 r_nbd_other 0.162 r_chiral_restr 0.109 r_nbtor_other 0.093 r_xyhbond_nbd_other 0.021 r_bond_refined_d 0.018 r_gen_planes_refined 0.006 r_bond_other_d 0.003 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4898 Nucleic Acid Atoms Solvent Atoms 381 Heterogen Atoms 27
Software Software Software Name Purpose MolProbity model building SHELX phasing REFMAC refinement SCALEPACK data scaling PDB_EXTRACT data extraction ADSC data collection DENZO data reduction SHARP phasing