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The crystal structure of OspA mutant
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2G8C PDB entry 2G8C
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.45 293 38% PEG400, and 100mM Imidazole, pH 6.45, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.19 43.87
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 33.356 α = 90 b = 53.226 β = 98.83 c = 65.195 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2006-07-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-D 0.97934 APS 23-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 50 99.8 0.064 27.43 4 20849
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.8 1.86 99.5 0.335 4.17 3.6 2047
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 2G8C 1.9 20 16987 16987 898 99.83 0.23443 0.23443 0.23172 0.2764 0.28612 0.3123 RANDOM 33.37
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.18 1.87 2.5 -4.11
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.493 r_dihedral_angle_3_deg 18.108 r_dihedral_angle_4_deg 10.128 r_dihedral_angle_1_deg 7.111 r_scangle_it 3.838 r_scbond_it 2.602 r_angle_refined_deg 1.67 r_mcangle_it 1.494 r_mcbond_it 1.478 r_angle_other_deg 0.819
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.493 r_dihedral_angle_3_deg 18.108 r_dihedral_angle_4_deg 10.128 r_dihedral_angle_1_deg 7.111 r_scangle_it 3.838 r_scbond_it 2.602 r_angle_refined_deg 1.67 r_mcangle_it 1.494 r_mcbond_it 1.478 r_angle_other_deg 0.819 r_symmetry_vdw_other 0.253 r_mcbond_other 0.241 r_symmetry_hbond_refined 0.231 r_nbd_other 0.206 r_nbd_refined 0.189 r_nbtor_refined 0.173 r_xyhbond_nbd_refined 0.167 r_symmetry_vdw_refined 0.155 r_chiral_restr 0.094 r_nbtor_other 0.094 r_xyhbond_nbd_other 0.036 r_bond_refined_d 0.018 r_gen_planes_refined 0.006 r_bond_other_d 0.005 r_gen_planes_other 0.001 r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1795 Nucleic Acid Atoms Solvent Atoms 50 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data collection HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing