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The crystal structure of OspA mutant
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2G8C PDB entry 2G8C
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.1 293 32% PEG400, 4% MPD, and 100mM Imidazole, pH 7.1, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.09 41.25
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 32.882 α = 90 b = 51.508 β = 98.56 c = 65.639 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2005-10-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 1 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 50 97 0.048 21.5 3.7 28159
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.6 1.66 95.6 0.475 2.96 3.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 2G8C 1.6 20 22172 26475 1427 97.04 0.22005 0.21794 0.2357 0.25877 0.2785 RANDOM 26.658
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.23 0.47 1.94 -3.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.667 r_dihedral_angle_3_deg 14.898 r_dihedral_angle_4_deg 12.184 r_dihedral_angle_1_deg 5.727 r_scangle_it 3.998 r_scbond_it 2.782 r_angle_refined_deg 1.569 r_mcangle_it 1.493 r_mcbond_it 1.214 r_angle_other_deg 0.764
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.667 r_dihedral_angle_3_deg 14.898 r_dihedral_angle_4_deg 12.184 r_dihedral_angle_1_deg 5.727 r_scangle_it 3.998 r_scbond_it 2.782 r_angle_refined_deg 1.569 r_mcangle_it 1.493 r_mcbond_it 1.214 r_angle_other_deg 0.764 r_mcbond_other 0.287 r_symmetry_vdw_other 0.275 r_symmetry_hbond_refined 0.244 r_nbd_refined 0.205 r_nbd_other 0.19 r_xyhbond_nbd_refined 0.172 r_symmetry_vdw_refined 0.169 r_nbtor_refined 0.164 r_nbtor_other 0.088 r_chiral_restr 0.087 r_bond_refined_d 0.014 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1807 Nucleic Acid Atoms Solvent Atoms 176 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data collection HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing