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c-Myc DNA Unwinding Element Binding Protein
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 290 10% PEG 8000, 200 mM KCl, 50 mM sodium cacodylate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 290K
Crystal Properties Matthews coefficient Solvent content 1.98 37.92
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 77.813 α = 90 b = 77.813 β = 90 c = 106.423 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 135 CCD ADSC QUANTUM 4 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-ID 1.0 APS 17-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 50 99.8 0.04 40 6.4 50139 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.05 100 0.282 6 5.9 5037
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIR THROUGHOUT 2 25 45864 2446 99.34 0.20641 0.20477 0.2043 0.23675 0.2352 RANDOM 44.089
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.21 0.6 1.21 -1.81
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.642 r_dihedral_angle_3_deg 18.463 r_dihedral_angle_4_deg 16.11 r_dihedral_angle_1_deg 6.619 r_scangle_it 3.057 r_scbond_it 1.983 r_angle_refined_deg 1.444 r_mcangle_it 1.194 r_angle_other_deg 0.969 r_mcbond_it 0.7
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.642 r_dihedral_angle_3_deg 18.463 r_dihedral_angle_4_deg 16.11 r_dihedral_angle_1_deg 6.619 r_scangle_it 3.057 r_scbond_it 1.983 r_angle_refined_deg 1.444 r_mcangle_it 1.194 r_angle_other_deg 0.969 r_mcbond_it 0.7 r_nbtor_refined 0.306 r_nbtor_other 0.237 r_nbd_refined 0.218 r_symmetry_vdw_refined 0.206 r_nbd_other 0.179 r_xyhbond_nbd_refined 0.162 r_symmetry_hbond_refined 0.125 r_chiral_restr 0.114 r_mcbond_other 0.028 r_bond_refined_d 0.014 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4712 Nucleic Acid Atoms Solvent Atoms 360 Heterogen Atoms 4
Software Software Software Name Purpose REFMAC refinement ADSC data collection HKL-2000 data reduction HKL-2000 data scaling SOLVE phasing