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Crystal structure of indol-3-acetaldehyde derived TTQ-amide adduct of aromatic amine dehydrogenase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6 292 PEG 2000 MME, AMMONIUM SULPHATE, SODIUM CACODYLATE, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 292K
Crystal Properties Matthews coefficient Solvent content 2.33 47.11
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 70.89 α = 90 b = 88.81 β = 90.62 c = 80.39 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 30 88 0.062 7.6 115670 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.66 90 0.367 1.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1.6 15 109712 5822 88.2 0.17445 0.17242 0.1843 0.21201 0.2207 RANDOM 22.289
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.06 -0.31 -0.07 0.13
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.716 r_dihedral_angle_4_deg 12.494 r_dihedral_angle_3_deg 11.961 r_dihedral_angle_1_deg 7.098 r_scangle_it 2.879 r_scbond_it 2.077 r_angle_other_deg 1.786 r_angle_refined_deg 1.598 r_mcangle_it 1.22 r_mcbond_it 0.927
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.716 r_dihedral_angle_4_deg 12.494 r_dihedral_angle_3_deg 11.961 r_dihedral_angle_1_deg 7.098 r_scangle_it 2.879 r_scbond_it 2.077 r_angle_other_deg 1.786 r_angle_refined_deg 1.598 r_mcangle_it 1.22 r_mcbond_it 0.927 r_mcbond_other 0.277 r_symmetry_vdw_other 0.229 r_nbd_refined 0.216 r_nbd_other 0.214 r_symmetry_vdw_refined 0.199 r_nbtor_refined 0.179 r_symmetry_hbond_refined 0.167 r_xyhbond_nbd_refined 0.147 r_nbtor_other 0.106 r_chiral_restr 0.102 r_bond_refined_d 0.015 r_bond_other_d 0.002 r_gen_planes_refined r_gen_planes_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7341 Nucleic Acid Atoms Solvent Atoms 1185 Heterogen Atoms 26
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction CrystalClear data collection d*TREK data reduction d*TREK data scaling