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The structure of a predicted thioesterase from Bacillus stearothermophilus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.6 291 0.1M TRIS-HCl pH 8.6, 0.2M MgCl2, 30% PEG 3350, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.11 41.81
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 76.521 α = 90 b = 93.051 β = 90 c = 75.844 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD CUSTOM-MADE 2006-06-22 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 0.97911, 0.97925 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 46.52 91.88 0.096 7.4 5.8 32522 32522 -3 20.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.052 67.72 0.296 3.3 4.1 1827
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2 46.52 32522 32522 1727 91.88 0.17847 0.17847 0.17561 0.1776 0.2326 0.2339 RANDOM 24.759
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.04 3.09 -1.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.358 r_dihedral_angle_4_deg 20.952 r_dihedral_angle_3_deg 15.536 r_dihedral_angle_1_deg 5.989 r_scangle_it 3.73 r_scbond_it 2.636 r_angle_refined_deg 1.433 r_mcangle_it 1.42 r_mcbond_it 1.234 r_nbtor_refined 0.309
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.358 r_dihedral_angle_4_deg 20.952 r_dihedral_angle_3_deg 15.536 r_dihedral_angle_1_deg 5.989 r_scangle_it 3.73 r_scbond_it 2.636 r_angle_refined_deg 1.433 r_mcangle_it 1.42 r_mcbond_it 1.234 r_nbtor_refined 0.309 r_nbd_refined 0.204 r_symmetry_hbond_refined 0.178 r_symmetry_vdw_refined 0.173 r_xyhbond_nbd_refined 0.171 r_chiral_restr 0.103 r_bond_refined_d 0.014 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4340 Nucleic Acid Atoms Solvent Atoms 447 Heterogen Atoms 14
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection HKL-3000 data reduction HKL-3000 data scaling HKL-3000 phasing SHELXD phasing SHELXE model building MLPHARE phasing DM phasing SOLVE phasing RESOLVE phasing ARP/wARP model building CCP4 phasing O model building Coot model building